PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.197630.2
Common NameCsa_1G009660, LOC101220270
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 261aa    MW: 28659.6 Da    PI: 6.6061
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.197630.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000313785254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +  + erE+  R+++N+ f  L   l        + + Ka+iL +A + +k+L
  Cucsa.197630.2 37 KIHKAEREKLKREHLNDLFLDLANALELT----EPNNGKASILSEASRLLKDL 85
                    567889********************996....57799999**9999988876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-92597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.38E-43385No hitNo description
PROSITE profilePS5088810.1053585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-536104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVSEVPSKPV VETDAPVMAS VSRNSPGKKN QVKVPKKIHK AEREKLKREH LNDLFLDLAN  60
ALELTEPNNG KASILSEASR LLKDLFGQIE CLRKEHALLL SESRYVDIEK TELREETSAL  120
ASQIEKLQSE LQSRAVHSKP DLNVTPPSEF PQQGTTVQHF SGECLGLPVM EPTLQQTHAV  180
FIVPVRPDLP SYPATDATHA PIMPTSHVSK PHARYPTPAD SWPAGLLKLS QTTEASKEAL  240
AIGCKNFADM GERGYDRSES *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818130.0LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660048.10.0PREDICTED: transcription factor bHLH47
SwissprotQ9SN748e-59BH047_ARATH; Transcription factor bHLH47
TrEMBLA0A0A0LSA00.0A0A0A0LSA0_CUCSA; Uncharacterized protein
STRINGGLYMA17G10740.19e-76(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.34e-50bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]